Showing 194 open source projects for "java-orm"

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  • 1
    memesa-tools

    memesa-tools

    A collection of tools used in the enumeration of solution spaces

    This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function.
    Downloads: 0 This Week
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  • 2
    Temperature Unit Converter

    Temperature Unit Converter

    Temperature Unit Converter

    ...(Or by visiting this page from your Android device) ---------------------------- A simple and useful GUI(Linux only) and command line program that lets you convert widely used temperature units to each other: Fahrenheit, Celsius and Kelvin. ------------------------------- Written by İ. Yuşa Çetin Using Python and gtk for GUI, C for algorithms and command line usage, Java for the Android version. ------------------------------------- This is still a Beta, so no one in the universe is responsible for anything happens :) I have it on my own computer and it's working properly. If you find any bugs feel free to tell me : yusha493@gmail.com --------------- If you are interested in translating the Android app to another language,current languages: *English *Turkish -Both by me :) ,please contact me: yusha493@gmail.com
    Downloads: 0 This Week
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  • 3
    Microscopy Image Processing Package
    XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
    Downloads: 0 This Week
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  • 4
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
    Downloads: 0 This Week
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  • 5

    SCaVis

    Scientific Computation and Visualization Environment

    SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. ...
    Downloads: 0 This Week
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  • 6

    openSEQ

    NGS compute distro proloaded with pipeline analysis software

    ...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk
    Downloads: 0 This Week
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  • 7

    iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular...
    Downloads: 0 This Week
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  • 8
    Cospace Dance

    Cospace Dance

    Robot for cospace dance

    A complete set of code to build your own robot for cospace dance using: raspberry pi, arduino, xbee and blender,
    Downloads: 0 This Week
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  • 9
    microtransat
    A project to host code developed for the Microtransat challenge, a race between autonomous sailing robots. This project is intended for both supporting code such as tracking systems and robot control systems or parts of robot control systems.
    Downloads: 0 This Week
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  • 10
    vipR is a program to screen for sequence variants (SNPs, deletions) in sequence data generated by high-throughput-sequencing platforms. Information on this and other projects can be found on: http://www.altmann.eu
    Downloads: 1 This Week
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  • 11
    ActiveFolder

    ActiveFolder

    ActiveFolder can be integrated with existed scientific computation.

    Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification.
    Downloads: 0 This Week
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  • 12

    ktree

    clustering, machine learning, algorithms

    This project has moved to github at http://lmwtree.devries.ninja.
    Downloads: 0 This Week
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  • 13

    Experiment manager

    Computer science experiment manager

    experimaestro is an experiment manager, and is composed of (1) a job scheduler that handles dependencies and locking (2) a modular experiment description framework, that allows easy description of the various parts of an experiments.
    Downloads: 0 This Week
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  • 14
    Easy Equations

    Easy Equations

    Hand Written Equation Creator

    Easy Equations is a utility using which one can write the mathematical equations. The focus of this utility is to provide user friendly access to write mathematical equations which is helpful for students, lecturers, mathematicians and Research persons who prefer using mathematical equations in a document, PowerPoint or web sites. Works on Windows as well as Linux platforms. Software Requirements: JDK 7 or higher. Linux Platform with kernel version 2.7 or higher.(for Linux users).python...
    Downloads: 0 This Week
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  • 15
    GISBox by Citiviz

    GISBox by Citiviz

    Ready-to-use appliance for GIS, Data Mining and Analysis, Modelling...

    GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software...
    Downloads: 0 This Week
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  • 16

    MSTParser

    MSTParser is a non-projective dependency parser that searches for maxi

    MSTParser is a non-projective dependency parser that searches for maximum spanning trees over directed graphs. Models of dependency structure are based on large-margin discriminative training methods. Projective parsing is also supported. mstparser 0.5.1 is now available via Maven Central. If you use Maven as your build tool, then you can add it as a dependency in your pom.xml file: <dependency> <groupId>net.sourceforge.mstparser</groupId> <artifactId>mstparser</artifactId> ...
    Downloads: 0 This Week
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  • 17
    AutoFlight

    AutoFlight

    AutoFlight is a powerful, open source AR.Drone control program.

    AutoFlight features AR.Drone control with a gamepad or joystick, sensor data logging, 3d mapping, Python scripting to automate the drone's behavior and Arduino extensions.
    Downloads: 1 This Week
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  • 18
    Natural Risk Sensing
    Platform providing the support for Wireless Sensor Networks in the domain of Natural Hazards as a Service. The objective of the WSN platform is monitoring the behaviour of rockfall barriers, rockfall netting, rock sheds and other protection systems
    Downloads: 0 This Week
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  • 19
    Rospo GeoTech

    Rospo GeoTech

    Tool-Kit aplication for system Geo Integrations

    Project created to develop customizations in OpenGeo, to contribute to the standardization of formats Brazilians. Tool-Kit aplication for system Geo Integrations, using java frameworks.
    Downloads: 0 This Week
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  • 20
    Abandoned version of qbc. DOES NOT WORK properly
    Downloads: 0 This Week
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  • 21

    SLiMScape

    A Protein Short Linear Motif Analysis Plugin for Cytoscape

    SLiMScape adds Short linear motif discovery tools to Cytoscape, transforming it into a SLiM discovery platform. A tutorial is available at the following URL: http://bioware.ucd.ie/slimscape/
    Downloads: 0 This Week
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  • 22
    Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
    Downloads: 0 This Week
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  • 23
    PACS VM

    PACS VM

    ISO - Customized version of dcm4chee 2.17.3 for MySQL.

    1. Add JBoss Application Server 4.2.3.GA for JDK 6. 2. Cleanup for Windows and deprecated files. 3. Off CONSOLE records - http://forums.dcm4che.org/jiveforums/thread.jspa?messageID=4787
    Downloads: 2 This Week
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  • 24
    GEPETTO - Gene Prioritization in Java

    GEPETTO - Gene Prioritization in Java

    GEPETTO (GEne Prioritization ExTended TOol)

    ...It currently incorporates six prioritization modules, based on gene sequence, protein-protein interactions, gene expression, disease-causing probabilities, genomic context). GEPETTO is written in Java/Python and supported by an advanced modular architecture, which means that it can easily be modified and extended by the user, in order to include alternative scoring methods and new data sources. We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database. ...
    Downloads: 0 This Week
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  • 25
    Rapid application development environment for high-level control of particle accelerators.
    Downloads: 0 This Week
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