https://sourceforge.net/p/flashpage/activity/Recent activity for FLASHenThu, 06 Feb 2020 12:26:24 -0000https://sourceforge.net/p/flashpage/bugs/1/-d flag in windows does not workRobin van SchendelThu, 06 Feb 2020 12:26:24 -0000https://sourceforge.net/p/flashpage/bugs/1/https://sourceforge.net/p/flashpage/discussion/general/thread/3f574ffa/?limit=25#5ccfThanks for the feedback. This is known limitation of FLASH: it only considers substitution...synchronicitySat, 11 Jun 2016 02:54:21 -0000https://sourceforge.net/p/flashpage/discussion/general/thread/3f574ffa/?limit=25#5ccfhttps://sourceforge.net/p/flashpage/discussion/general/thread/3f574ffa/?limit=25#80afBefore enter in a discussion, I would like to congratulate all the people engaged...Renato OliveiraFri, 10 Jun 2016 18:27:32 -0000https://sourceforge.net/p/flashpage/discussion/general/thread/3f574ffa/?limit=25#80afhttps://sourceforge.net/p/flashpage/discussion/general/thread/3f574ffa/?limit=25#80afBefore enter in a discussion, I would like to congratulate all the people engaged...Renato OliveiraFri, 10 Jun 2016 18:27:13 -0000https://sourceforge.net/p/flashpage/discussion/general/thread/3f574ffa/?limit=25#80afhttps://sourceforge.net/p/flashpage/discussion/general/thread/3f574ffa/?limit=25#80afBefore enter in a discussion, I would like to congratulate all the people engaged...Renato OliveiraFri, 10 Jun 2016 18:26:17 -0000https://sourceforge.net/p/flashpage/discussion/general/thread/3f574ffa/?limit=25#80afhttps://sourceforge.nethttp%3A//sourceforge.net/projects/flashpage/files/FLASH-1.2.11-windows-bin.zip/downloadFLASHMon, 04 Aug 2014 23:38:04 -0000http://sourceforge.net/projects/flashpage/files/FLASH-1.2.11-windows-bin.zip/downloadhttps://sourceforge.net/p/flashpage/code/ci/7d3dfe4e181713e2dc44ea44ca38109dce8069d4/Fix crash in --allow-outies edge caseEric BiggersMon, 04 Aug 2014 23:37:03 -0000https://sourceforge.net/p/flashpage/code/ci/7d3dfe4e181713e2dc44ea44ca38109dce8069d4/https://sourceforge.net/p/flashpage/code/ci/304e456baea2696e85b866752dd10984668f603d/v1.2.11Eric BiggersMon, 04 Aug 2014 23:37:03 -0000https://sourceforge.net/p/flashpage/code/ci/304e456baea2696e85b866752dd10984668f603d/https://sourceforge.nethttp%3A//sourceforge.net/projects/flashpage/files/FLASH-1.2.11.tar.gz/downloadFLASHMon, 04 Aug 2014 23:37:03 -0000http://sourceforge.net/projects/flashpage/files/FLASH-1.2.11.tar.gz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/flashpage/files/FLASH-1.2.10-windows-bin.zip/downloadFLASHFri, 18 Apr 2014 15:11:05 -0000http://sourceforge.net/projects/flashpage/files/FLASH-1.2.10-windows-bin.zip/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/flashpage/files/FLASH-1.2.10.tar.gz/downloadFLASHFri, 18 Apr 2014 15:11:05 -0000http://sourceforge.net/projects/flashpage/files/FLASH-1.2.10.tar.gz/downloadhttps://sourceforge.net/p/flashpage/code/ci/bcaaaf8b73d101a3134fe94843c48745eb783512/Suggest directing both stdout and stderr to log...Eric BiggersFri, 18 Apr 2014 15:09:54 -0000https://sourceforge.net/p/flashpage/code/ci/bcaaaf8b73d101a3134fe94843c48745eb783512/https://sourceforge.net/p/flashpage/code/ci/c842cec37f7da968f2df27fc4cf500cef8365f32/v1.2.10Eric BiggersFri, 18 Apr 2014 15:09:54 -0000https://sourceforge.net/p/flashpage/code/ci/c842cec37f7da968f2df27fc4cf500cef8365f32/https://sourceforge.net/p/flashpage/code/ci/268c04f67dbfb5ee88eab317e7b92efbc303eb0d/Always use 64 bits for combined read length cou...Eric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/268c04f67dbfb5ee88eab317e7b92efbc303eb0d/https://sourceforge.net/p/flashpage/code/ci/34ac30f3c5475ffe61d02d010074399845bfc426/Warn the user about potential problems with par...Eric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/34ac30f3c5475ffe61d02d010074399845bfc426/https://sourceforge.net/p/flashpage/code/ci/d900f18f171b369fbf13a150e2af4a3440c78003/Warn when >10% of chosen overlaps were longer t...Eric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/d900f18f171b369fbf13a150e2af4a3440c78003/https://sourceforge.net/p/flashpage/code/ci/c4743595a104a9683475730b6fe53d817fc39c12/Allow combining read pairs in outie orientationEric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/c4743595a104a9683475730b6fe53d817fc39c12/https://sourceforge.net/p/flashpage/code/ci/7336bb2147800684497ef2e53b1fb31e6b58b018/Report innie and outie combination statisticsEric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/7336bb2147800684497ef2e53b1fb31e6b58b018/https://sourceforge.net/p/flashpage/code/ci/496304211032b5a990a18a6a4881702bec2ede66/flash.c: Style fixEric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/496304211032b5a990a18a6a4881702bec2ede66/https://sourceforge.net/p/flashpage/code/ci/6d3d0e9fc57f8b802446fe38f163d50892e3ba90/Fix --max-overlap help output: default is 65bp,...Eric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/6d3d0e9fc57f8b802446fe38f163d50892e3ba90/https://sourceforge.net/p/flashpage/code/ci/6faf4b5ba2f320ee09ebd9ef4ba4468f9953d0ea/Print warning count at end of output if greater...Eric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/6faf4b5ba2f320ee09ebd9ef4ba4468f9953d0ea/https://sourceforge.net/p/flashpage/code/ci/fc5d7beccbee59231b2134ff1eef902d2b3ccc3e/Update NEWSEric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/fc5d7beccbee59231b2134ff1eef902d2b3ccc3e/https://sourceforge.net/p/flashpage/code/ci/d3e9e08d30e1f2685257ebc2fcd3cfd581092a80/With --allow-outie, also produce .innie and .ou...Eric BiggersFri, 04 Apr 2014 06:12:06 -0000https://sourceforge.net/p/flashpage/code/ci/d3e9e08d30e1f2685257ebc2fcd3cfd581092a80/https://sourceforge.nethttp%3A//sourceforge.net/projects/flashpage/files/FLASH-1.2.9-windows-bin.zip/downloadFLASHMon, 24 Feb 2014 22:07:04 -0000http://sourceforge.net/projects/flashpage/files/FLASH-1.2.9-windows-bin.zip/downloadhttps://sourceforge.net/p/flashpage/code/ci/7d213f28c635ebcafcb711580a6c248ea583bc10/xopen(): Fix typo in commentEric BiggersMon, 24 Feb 2014 22:06:15 -0000https://sourceforge.net/p/flashpage/code/ci/7d213f28c635ebcafcb711580a6c248ea583bc10/https://sourceforge.net/p/flashpage/code/ci/17c1e07abe08badd2d6c8b7eb08521eaba19cd71/README: Fix memory measurementEric BiggersMon, 24 Feb 2014 22:06:15 -0000https://sourceforge.net/p/flashpage/code/ci/17c1e07abe08badd2d6c8b7eb08521eaba19cd71/https://sourceforge.net/p/flashpage/code/ci/7e9742f4b5aa64d2e515f5676dda0a8d78e12ed9/v1.2.9Eric BiggersMon, 24 Feb 2014 22:06:15 -0000https://sourceforge.net/p/flashpage/code/ci/7e9742f4b5aa64d2e515f5676dda0a8d78e12ed9/https://sourceforge.nethttp%3A//sourceforge.net/projects/flashpage/files/FLASH-1.2.9.tar.gz/downloadFLASHMon, 24 Feb 2014 22:06:03 -0000http://sourceforge.net/projects/flashpage/files/FLASH-1.2.9.tar.gz/downloadhttps://sourceforge.net/p/flashpage/code/ci/b15ff661ae84328aa0380fc8f887ff21e7093e05/Improve FLASH help output and READMEEric BiggersMon, 24 Feb 2014 18:22:06 -0000https://sourceforge.net/p/flashpage/code/ci/b15ff661ae84328aa0380fc8f887ff21e7093e05/https://sourceforge.net/p/flashpage/code/ci/91a0b8e821a2cedde8de23d067f1d9a350aa3809/xopen(): Set stdin or stdout to binary mode on...Eric BiggersTue, 18 Feb 2014 18:08:43 -0000https://sourceforge.net/p/flashpage/code/ci/91a0b8e821a2cedde8de23d067f1d9a350aa3809/https://sourceforge.net/p/flashpage/code/ci/96c3c43c12f8eadde31ee381b4b487b494aaa7e9/iostream.c: Add call to posix_fadvise()Eric BiggersTue, 18 Feb 2014 01:46:58 -0000https://sourceforge.net/p/flashpage/code/ci/96c3c43c12f8eadde31ee381b4b487b494aaa7e9/https://sourceforge.net/p/flashpage/code/ci/0787acec83d789ad1eaf1e98ed272fdd62051bb1/Increase READS_PER_READ_SET if SSE2 enabledEric BiggersMon, 17 Feb 2014 21:36:01 -0000https://sourceforge.net/p/flashpage/code/ci/0787acec83d789ad1eaf1e98ed272fdd62051bb1/https://sourceforge.net/p/flashpage/code/ci/fbbdbf6c76d8b8f63886216c8140ec62fcc0845f/Size read sets depending on thread countEric BiggersMon, 17 Feb 2014 21:36:01 -0000https://sourceforge.net/p/flashpage/code/ci/fbbdbf6c76d8b8f63886216c8140ec62fcc0845f/https://sourceforge.net/p/flashpage/code/ci/9906c069cb70a9ac4ca1da880bde81f26c12ff88/Add SSE/SSE2 optimizationsEric BiggersMon, 17 Feb 2014 06:54:34 -0000https://sourceforge.net/p/flashpage/code/ci/9906c069cb70a9ac4ca1da880bde81f26c12ff88/https://sourceforge.net/p/flashpage/code/ci/288b43d2a117b5462adc67cc3e37f1a02b09c175/load_tab_delimited_pair(): Copy tag from read 1...Eric BiggersSun, 16 Feb 2014 16:38:08 -0000https://sourceforge.net/p/flashpage/code/ci/288b43d2a117b5462adc67cc3e37f1a02b09c175/https://sourceforge.net/p/flashpage/code/ci/9197a8a84e8c2c9438d36e3d643f3eff5b924490/Move read utility functions to read_util.cEric BiggersSun, 16 Feb 2014 16:38:08 -0000https://sourceforge.net/p/flashpage/code/ci/9197a8a84e8c2c9438d36e3d643f3eff5b924490/https://sourceforge.net/p/flashpage/code/ci/52bff8ece7d336e371b43002abea002f7eec068d/Issue error if sequence string contains whitespaceEric BiggersSun, 16 Feb 2014 16:38:08 -0000https://sourceforge.net/p/flashpage/code/ci/52bff8ece7d336e371b43002abea002f7eec068d/https://sourceforge.net/p/flashpage/code/ci/c272d7ce2983e62eb7df52ca721b8dd420efe131/Use isspace() correctlyEric BiggersSun, 16 Feb 2014 16:38:08 -0000https://sourceforge.net/p/flashpage/code/ci/c272d7ce2983e62eb7df52ca721b8dd420efe131/https://sourceforge.net/p/flashpage/code/ci/fcd7d70beab0809aa47ad2ea072730a93d51b146/Fix read_util.c commentEric BiggersSun, 16 Feb 2014 16:38:08 -0000https://sourceforge.net/p/flashpage/code/ci/fcd7d70beab0809aa47ad2ea072730a93d51b146/https://sourceforge.net/p/flashpage/code/ci/4fce84dce89dfa5e5d65202e2c7654bbafd19383/load_tab_delimited_read(): Set tag_lenEric BiggersSun, 16 Feb 2014 16:38:08 -0000https://sourceforge.net/p/flashpage/code/ci/4fce84dce89dfa5e5d65202e2c7654bbafd19383/https://sourceforge.net/p/flashpage/code/ci/f39afceb303ee075b95aa73b8bac7d9ae3513d47/Don't list histogram files as output if writing...Eric BiggersSun, 16 Feb 2014 01:06:03 -0000https://sourceforge.net/p/flashpage/code/ci/f39afceb303ee075b95aa73b8bac7d9ae3513d47/https://sourceforge.net/p/flashpage/code/ci/0cf6d642a45f856fe1ce0ee4f229dd014806e33a/With --to-stdout, redirect informational messag...Eric BiggersSat, 15 Feb 2014 23:47:14 -0000https://sourceforge.net/p/flashpage/code/ci/0cf6d642a45f856fe1ce0ee4f229dd014806e33a/https://sourceforge.net/p/flashpage/code/ci/c85b8363bda0a0586b7b024df781d5113224db3b/Clarify error message when 1 input file specifiedEric BiggersSat, 15 Feb 2014 23:47:14 -0000https://sourceforge.net/p/flashpage/code/ci/c85b8363bda0a0586b7b024df781d5113224db3b/https://sourceforge.net/p/flashpage/code/ci/afcbaa217083f8ba098a8b94fd4ebe5a3da4cdd1/Add -Ti and -To optionsEric BiggersSat, 15 Feb 2014 23:47:14 -0000https://sourceforge.net/p/flashpage/code/ci/afcbaa217083f8ba098a8b94fd4ebe5a3da4cdd1/https://sourceforge.net/p/flashpage/code/ci/0e56b0a8abdf1da1fd6256f319772e6f22dcbf86/Fix build when __GNUC__ not definedEric BiggersSat, 15 Feb 2014 23:47:14 -0000https://sourceforge.net/p/flashpage/code/ci/0e56b0a8abdf1da1fd6256f319772e6f22dcbf86/https://sourceforge.net/p/flashpage/code/ci/618dde86c80ff466456ee242c2c4edad8fe050c3/Allow mixed paired-unpaired reads in tab-delimi...Eric BiggersSat, 15 Feb 2014 23:47:14 -0000https://sourceforge.net/p/flashpage/code/ci/618dde86c80ff466456ee242c2c4edad8fe050c3/https://sourceforge.net/p/flashpage/code/ci/f85f28e8596183bf1e30784d88dd3aa3ffd56855/Log exit status when fatal error occursEric BiggersSat, 15 Feb 2014 23:47:14 -0000https://sourceforge.net/p/flashpage/code/ci/f85f28e8596183bf1e30784d88dd3aa3ffd56855/https://sourceforge.net/p/flashpage/code/ci/fe291ed74ba81a3038a3f9d5ec1cb221c37b9658/Note in log if gzip format usedEric BiggersSat, 15 Feb 2014 23:47:14 -0000https://sourceforge.net/p/flashpage/code/ci/fe291ed74ba81a3038a3f9d5ec1cb221c37b9658/https://sourceforge.net/p/flashpage/code/ci/1b2aeb205f1fc5e571ee7757267593bde7519420/Minor cleanupsEric BiggersSat, 15 Feb 2014 00:21:30 -0000https://sourceforge.net/p/flashpage/code/ci/1b2aeb205f1fc5e571ee7757267593bde7519420/https://sourceforge.net/p/flashpage/code/ci/8745a9f7af48758e888652ce8a35d5c068e3ee80/Fix reading from standard inputEric BiggersSat, 15 Feb 2014 00:21:30 -0000https://sourceforge.net/p/flashpage/code/ci/8745a9f7af48758e888652ce8a35d5c068e3ee80/https://sourceforge.net/p/flashpage/code/ci/d93fa9381ae469cc4ec8d9a3f3d9cb274d0b596b/Reorganize I/O code and add tab-delimited supportEric BiggersFri, 14 Feb 2014 22:15:07 -0000https://sourceforge.net/p/flashpage/code/ci/d93fa9381ae469cc4ec8d9a3f3d9cb274d0b596b/