MANTIS R Package

This repository contains the most updated code version of MANTIS, the Multi-locus ANTIgenic Simulator R-package.

MANTIS is developed and maintained by the Evolutionary Ecology of Infectious Disease (EEID) research group at the Department of Zoology, University of Oxford, UK.

For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS)

At the moment, MANTIS is not available on CRAN.

To build a source package of MANTIS, use the script buildPackage.R

To install MANTIS use 'install.packages(file.tar.gz,type="src",repo=NULL)'

To test use test_V3.3_code.R

Contact the main author of the publication above for further details.

Have fun!